10X Xenium - Mouse Brain

Gene expression library of Post Xenium Mouse Brain (CytAssist Fresh Frozen) using the Mouse Whole Transcriptome Probe Set - Replicate 1

10x_datasets

Info

10x_datasets/mouse_brain_xenium
10x Genomics (2023)
126.5 MiB
20-08-2024
5302 × 13883

Used in

Description

This dataset is provided as part of the Technical Note: Post-Xenium In Situ Applications: Immunofluorescence, H&E, and Visium CytAssist Spatial Gene Expression (CG000709). Post-Xenium samples were compared to controls (samples not processed through the Xenium workflow) using 10 µm fresh-frozen (FF) serial sections.

Preview

dataset is an AnnData object with n_obs × n_vars = 5302 × 13883 with slots:

Reference

Name Description Type Data type Size
var
feature_id Unique identifier for the feature, usually a ENSEMBL gene id. vector object 13883
feature_name A human-readable name for the feature, usually a gene symbol. vector object 13883
layers
counts Raw counts sparsematrix float32 5302 × 13883
uns
dataset_description Long description of the dataset. atomic str 1
dataset_id A unique identifier for the dataset. This is different from the obs.dataset_id field, which is the identifier for the dataset from which the cell data is derived. atomic str 1
dataset_name A human-readable name for the dataset. atomic str 1
dataset_organism The organism of the sample in the dataset. atomic str 1
dataset_reference Bibtex reference of the paper in which the dataset was published. atomic str 1
dataset_summary Short description of the dataset. atomic str 1
dataset_url Link to the original source of the dataset. atomic str 1

References

10x Genomics. 2023. “Visium CytAssist Gene Expression Libraries of Post-Xenium Mouse Brain (FF).” https://www.10xgenomics.com/datasets/visium-cytassist-gene-expression-libraries-of-post-xenium-mouse-brain-ff-using-the-mouse-whole-transcriptome-probe-set-2-standard.